r488: parameter to control max fragment length

2026-10-02 01:48:13 +08:00 · 2017-10-07 23:54:32 -04:00
parent f150257a0d
commit 61e56c941d
3 changed files with 29 additions and 17 deletions
@@ -89,6 +89,7 @@ typedef struct {

 	int bw;          // bandwidth
 	int max_gap, max_gap_ref; // break a chain if there are no minimizers in a max_gap window
+	int max_frag_len;
 	int max_chain_skip;
 	int min_cnt;         // min number of minimizers on each chain
 	int min_chain_score; // min chaining score