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@@ -118,7 +118,7 @@ void mm_write_sam_hdr(const mm_idx_t *idx, const char *rg, const char *ver, int
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if (idx) {
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uint32_t i;
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for (i = 0; i < idx->n_seq; ++i)
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printf("@SQ\tSN:%s\tLN:%d\n", idx->seq[i].name, idx->seq[i].len);
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mm_sprintf_lite(&str, "@SQ\tSN:%s\tLN:%d\n", idx->seq[i].name, idx->seq[i].len);
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}
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if (rg) sam_write_rg_line(&str, rg);
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mm_sprintf_lite(&str, "@PG\tID:minimap2\tPN:minimap2");
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@@ -129,8 +129,7 @@ void mm_write_sam_hdr(const mm_idx_t *idx, const char *rg, const char *ver, int
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for (i = 1; i < argc; ++i)
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mm_sprintf_lite(&str, " %s", argv[i]);
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}
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mm_sprintf_lite(&str, "\n");
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fputs(str.s, stdout);
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mm_err_puts(str.s);
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free(str.s);
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}
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