r144: adjust primary aln after cigar

This commit is contained in:
Heng Li
2017-07-02 22:43:02 -04:00
parent 2b45ba7a0b
commit 632b8638d2
3 changed files with 27 additions and 3 deletions
+1 -1
View File
@@ -45,7 +45,7 @@ typedef struct {
typedef struct {
uint32_t capacity;
int32_t dp_score, dp_max;
int32_t dp_score, dp_max, dp_max2;
uint32_t blen;
uint32_t n_diff, n_ambi;
uint32_t n_cigar;