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added algorithm overview

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Heng Li
2017-07-27 18:50:39 -04:00
parent 2c79580649
commit 667b32a516
2 changed files with 52 additions and 9 deletions
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minimap2.1
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@@ -1,4 +1,4 @@
.TH minimap2 1 "19 July 2017" "minimap2-2.0-r190-dirty" "Bioinformatics tools"
.TH minimap2 1 "27 July 2017" "minimap2-2.0-r213-dirty" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -137,10 +137,8 @@ number of minimizers [3]
.BI -m \ INT
Discard chains with chaining score
.RI < INT
[40]. Chaining score equals the approximate number of matching bases (exact if
not using
.BR -H )
minus base-2 logarithm gap penalty. It is computed with dynamic programming.
[40]. Chaining score equals the approximate number of matching bases minus a
linear gap penalty. It is computed with dynamic programming.
.TP
.B -X
Perform all-vs-all mapping. In this mode, if the query sequence name is