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r940: added the splice:hq preset

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for high-quality CCS/mRNA splice alignment
This commit is contained in:
Heng Li
2019-05-04 14:00:31 -04:00
parent c2aec88b84
commit 6762368cf0
4 changed files with 13 additions and 5 deletions
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minimap2.1
+7 -1
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@@ -1,4 +1,4 @@
.TH minimap2 1 "30 April 2019" "minimap2-2.16-dirty (r938)" "Bioinformatics tools"
.TH minimap2 1 "4 May 2019" "minimap2-2.16-dirty (r940)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -568,6 +568,12 @@ costs are different during chaining; 4) the computation of the
.RB ` ms '
tag ignores introns to demote hits to pseudogenes.
.TP
.B splice:hq
Long-read splice alignment for PacBio CCS reads
.RB ( -xsplice
.B -C5 -O6,24
.BR -B4 ).
.TP
.B sr
Short single-end reads without splicing
.RB ( -k21