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r1215: scoring apparently works

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Heng Li
2024-10-12 22:29:27 -04:00
parent d1f4c8d232
commit 68179ed195
3 changed files with 8 additions and 9 deletions
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ksw2_exts2_sse.c
+4 -3
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@@ -192,11 +192,12 @@ void ksw_exts2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uin
}
if (junc && (flag & KSW_EZ_SPLICE_SCORE)) { // junc[] keeps the donor score
uint8_t donor_val = !(flag & KSW_EZ_REV_CIGAR)? 0 : 1;
uint8_t donor_val = !!(flag & KSW_EZ_SPLICE_FOR) == !(flag & KSW_EZ_REV_CIGAR)? 0 : 1;
for (t = 0; t < tlen - 1; ++t)
((int8_t*)donor)[t] += junc[t+1] == 0xff? -junc_pen : (junc[t+1]&1) == donor_val? (int8_t)(junc[t+1]>>1) - (int8_t)KSW_SPSC_OFFSET : 0;
((int8_t*)donor)[t] += junc[t+1] == 0xff || (junc[t+1]&1) != donor_val? -junc_pen : (int8_t)(junc[t+1]>>1) - (int8_t)KSW_SPSC_OFFSET;
for (t = 0; t < tlen - 1; ++t)
((int8_t*)acceptor)[t] += junc[t+1] == 0xff? -junc_pen : (junc[t+1]&1) == !donor_val? (int8_t)(junc[t+1]>>1) - (int8_t)KSW_SPSC_OFFSET : 0;
((int8_t*)acceptor)[t] += junc[t+1] == 0xff || (junc[t+1]&1) != !donor_val? -junc_pen : (int8_t)(junc[t+1]>>1) - (int8_t)KSW_SPSC_OFFSET;
//for (t = 0; t < tlen - 1; ++t) if (junc[t+1] != 0xff) fprintf(stderr, "Y2\t%d\t%d\t%c\t%d\n", ((int8_t*)donor)[t], ((int8_t*)acceptor)[t], "DA"[junc[t+1]&1], (int8_t)(junc[t+1]>>1) - (int8_t)KSW_SPSC_OFFSET);
} else if (junc) { // junc[] keeps the splice sites
if (!(flag & KSW_EZ_REV_CIGAR)) {
for (t = 0; t < tlen - 1; ++t)