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r361: improved mapq for short reads

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Heng Li
2017-09-13 15:32:39 -04:00
parent 3c91d652dd
commit 6a82a21dee
5 changed files with 25 additions and 15 deletions
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main.c
+2 -2
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@@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "getopt.h"
#define MM_VERSION "2.1.1-r360-dirty"
#define MM_VERSION "2.1.1-r361-dirty"
#ifdef __linux__
#include <sys/resource.h>
@@ -29,7 +29,7 @@ static struct option long_options[] = {
{ "no-kalloc", no_argument, 0, 0 },
{ "print-qname", no_argument, 0, 0 },
{ "no-self", no_argument, 0, 0 },
{ "print-seed", no_argument, 0, 0 },
{ "print-seeds", no_argument, 0, 0 },
{ "max-chain-skip", required_argument, 0, 0 },
{ "min-dp-len", required_argument, 0, 0 },
{ "print-aln-seq", no_argument, 0, 0 },