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r361: improved mapq for short reads

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Heng Li
2017-09-13 15:32:39 -04:00
parent 3c91d652dd
commit 6a82a21dee
5 changed files with 25 additions and 15 deletions
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mmpriv.h
+1 -1
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@@ -58,7 +58,7 @@ void mm_select_sub(void *km, float mask_level, float pri_ratio, int min_diff, in
void mm_filter_regs(void *km, const mm_mapopt_t *opt, int *n_regs, mm_reg1_t *regs);
void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_reg1_t *regs, mm128_t *a);
void mm_hit_sort_by_dp(void *km, int *n_regs, mm_reg1_t *r);
void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc);
void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc, int n_rep_mini);
#ifdef __cplusplus
}