miniprot-like splice model

slightly worse on iso-seq and slightly better on direct-RNA
2026-10-08 22:58:12 +08:00 · 2022-10-06 09:10:17 -04:00
parent 5aa4355ca8
commit 6c2cbf7903
7 changed files with 104 additions and 7 deletions
@@ -15,6 +15,7 @@
 #define KSW_EZ_SPLICE_FOR  0x100
 #define KSW_EZ_SPLICE_REV  0x200
 #define KSW_EZ_SPLICE_FLANK 0x400
+#define KSW_EZ_SPLICE_CMPLX 0x800

 // The subset of CIGAR operators used by ksw code.
 // Use MM_CIGAR_* from minimap.h if you need the full list.