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miniprot-like splice model

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slightly worse on iso-seq and slightly better on direct-RNA
This commit is contained in:
Heng Li
2022-10-06 09:10:17 -04:00
parent 5aa4355ca8
commit 6c2cbf7903
7 changed files with 104 additions and 7 deletions
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misc/paftools.js
+4 -2
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@@ -3308,8 +3308,10 @@ function paf_gff2junc(args) {
if (t[0][0] == '#') continue;
if (t[2].toLowerCase() != feat.toLowerCase()) continue;
//print(t.join("\t"));
if ((m = /\bParent=([^;]+)/.exec(t[8])) == null)
throw Error("Can't find Parent");
if ((m = /\bParent=([^;]+)/.exec(t[8])) == null) {
warn("Can't find Parent");
continue;
}
t[3] = parseInt(t[3]) - 1;
t[4] = parseInt(t[4]);
t.unshift(m[1]);