get the left-extension sequence correctly

2026-10-07 10:38:13 +08:00 · 2017-06-23 18:25:47 -04:00
parent 990f7b0b71
commit 6c8368c24c
2 changed files with 57 additions and 21 deletions
@@ -41,6 +41,11 @@ typedef struct {
 	mm_idx_bucket_t *B; // index
 } mm_idx_t;

+typedef struct {
+	uint32_t n_cigar, m_cigar;
+	uint32_t cigar[];
+} mm_cigar_t;
+
 typedef struct {
 	uint32_t cnt:31, rev:1;
 	uint32_t rid:31, rep:1;
@@ -48,6 +53,7 @@ typedef struct {
 	int32_t qs, qe, rs, re;
 	int32_t parent, subsc;
 	int32_t as;
+	mm_cigar_t *cigar;
 } mm_reg1_t;

 typedef struct {