backup

tex/minimap2.bib

@@ -7,7 +7,7 @@
 	Year = {2012}}
 
 @article{Liu:2016ab,
-	Author = {Liu, Bo and Guan, Dengfeng and Teng, Mingxiang and Wang, Yadong},
+	Author = {Liu, Bo and others},
 	Journal = {Bioinformatics},
 	Pages = {1625-31},
 	Title = {{rHAT}: fast alignment of noisy long reads with regional hashing},
@@ -15,7 +15,7 @@
 	Year = {2016}}
 
 @article{Liu:2017aa,
-	Author = {Liu, Bo and Gao, Yan and Wang, Yadong},
+	Author = {Liu, Bo and others},
 	Journal = {Bioinformatics},
 	Pages = {192-201},
 	Title = {{LAMSA}: fast split read alignment with long approximate matches},
@@ -38,7 +38,7 @@
 	Year = {2013}}
 
 @article{Sovic:2016aa,
-	Author = {Sovi{\'c}, Ivan and {\v S}iki{\'c}, Mile and Wilm, Andreas and Fenlon, Shannon Nicole and Chen, Swaine and others},
+	Author = {Sovi{\'c}, Ivan and others},
 	Journal = {Nat Commun},
 	Pages = {11307},
 	Title = {Fast and sensitive mapping of nanopore sequencing reads with {GraphMap}},
@@ -68,6 +68,13 @@
 	howpublished = {\href{https://github.com/ocxtal/minialign}{https://github.com/ocxtal/minialign}},
 	year = {2016}}
 
+@misc{Ruan:2016,
+	title = {Ultra-fast de novo assembler using long noisy reads},
+	author = {Jue Ruan},
+	journal = {Unpulished},
+	howpublished = {\href{https://github.com/ruanjue/smartdenovo}{https://github.com/ruanjue/smartdenovo}},
+	year = {2016}}
+
 @article{Miller:1988aa,
 	Author = {Miller, W and Myers, E W},
 	Journal = {Bull Math Biol},
@@ -86,7 +93,7 @@
 	Year = {1990}}
 
 @article{Wu:1996aa,
-	Author = {Wu, Sun and Manber, U and Myers, Gene},
+	Author = {Wu, Sun and others},
 	Journal = {Algorithmica},
 	Pages = {50-67},
 	Title = {A subquadratic algorithm for approximate limited expression matching},
@@ -98,22 +105,22 @@
 	Journal = {BMC Bioinformatics},
 	Month = {Feb},
 	Pages = {81},
-	Title = {Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments},
+	Title = {Parasail: {SIMD C} library for global, semi-global, and local pairwise sequence alignments},
 	Volume = {17},
 	Year = {2016}}
 
 @article{Sedlazeck169557,
-	author = {Sedlazeck, Fritz J and Rescheneder, Philipp and Smolka, Moritz and Fang, Han and Nattestad, Maria and others},
+	author = {Sedlazeck, Fritz J and others},
 	title = {Accurate detection of complex structural variations using single molecule sequencing},
 	note = {doi:10.1101/169557},
 	journal = {bioRxiv},
 	year = {2017}}
 
 @article{Altschul:1997vn,
-	Author = {Altschul, S F and Madden, T L and Sch{\"a}ffer, A A and Zhang, J and Zhang, Z and others},
+	Author = {Altschul, S F and others},
 	Journal = {Nucleic Acids Res},
 	Pages = {3389-402},
-	Title = {Gapped BLAST and PSI-BLAST: a new generation of protein database search programs},
+	Title = {Gapped {BLAST} and {PSI-BLAST}: a new generation of protein database search programs},
 	Volume = {25},
 	Year = {1997}}
 
@@ -132,3 +139,27 @@
 	Title = {Chaining algorithms for multiple genome comparison},
 	Volume = {3},
 	Year = {2005}}
+
+@article{Ono:2013aa,
+	Author = {Ono, Yukiteru and others},
+	Journal = {Bioinformatics},
+	Pages = {119-21},
+	Title = {{PBSIM}: {PacBio} reads simulator--toward accurate genome assembly},
+	Volume = {29},
+	Year = {2013}}
+
+@article {Jain128835,
+	author = {Jain, Miten and others},
+	title = {Nanopore sequencing and assembly of a human genome with ultra-long reads},
+	year = {2017},
+	note = {doi:10.1101/128835},
+	publisher = {Cold Spring Harbor Labs Journals},
+	journal = {bioRxiv}}
+
+@article{Lau:2016aa,
+	Author = {Lau, Bayo and others},
+	Journal = {Bioinformatics},
+	Pages = {3829-3832},
+	Title = {LongISLND: in silico sequencing of lengthy and noisy datatypes},
+	Volume = {32},
+	Year = {2016}}