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Heng Li
2017-08-02 19:52:31 -04:00
parent 9306299e4d
commit 6c9390b54a
6 changed files with 272 additions and 104 deletions
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tex/roc.gp
+44 -20
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@@ -1,28 +1,52 @@
set t po eps enh co so "Helvetica,18"
set t po eps enh co so "Helvetica,26"
set style line 1 lt 1 pt 1 lc rgb "#FF0000" lw 2;
set style line 2 lt 1 pt 2 lc rgb "#00C000" lw 2;
set style line 3 lt 1 pt 3 lc rgb "#0080FF" lw 2;
set style line 4 lt 1 pt 4 lc rgb "#C000FF" lw 2;
set style line 5 lt 1 pt 5 lc rgb "#00EEEE" lw 2;
set style line 6 lt 1 pt 6 lc rgb "#C04000" lw 2;
set style line 7 lt 1 lc rgb "#C8C800" lw 2;
set style line 8 lt 1 lc rgb "#FF80FF" lw 2;
set style line 9 lt 1 lc rgb "#4E642E" lw 2;
set style line 10 lt 1 lc rgb "#800000" lw 2;
set style line 11 lt 1 lc rgb "#67B7F7" lw 2;
set style line 12 lt 1 lc rgb "#FFC127" lw 2;
set xlab "False positive rate"
set ylab "Sensitivity"
set yran [0.9:1]
set style line 1 lt 1 pt 1 lc rgb "#e41a1c" lw 2;
set style line 2 lt 1 pt 2 lc rgb "#377eb8" lw 2;
set style line 3 lt 1 pt 3 lc rgb "#4daf4a" lw 2;
set style line 4 lt 1 pt 4 lc rgb "#984ea3" lw 2;
set style line 5 lt 1 pt 6 lc rgb "#ff7f00" lw 2;
set style line 6 lt 1 pt 8 lc rgb "#f781bf" lw 2;
set out "roc-color.eps"
set pointsize 2.0
set size 1.59,1.04
set multiplot layout 1,2
set label "(a)" at graph -0.245,1.06 font "Helvetica-bold,40"
set xlab "Error rate of mapped reads"
set ylab "Fraction of mapped reads" off +1.8
set ytics 0.02
set yran [0.9:1]
set size 0.8,1
set log x
set format x "10^{%L}"
set key bot right
plot "<./eval2roc.pl blasr-mc.eval" u 2:3 t "blasr-mc" w lp ls 1, \
plot "<./eval2roc.pl blasr-mc.eval" u 2:3 t "blasr-mc" w lp ls 4, \
"<./eval2roc.pl bwa.eval" u 2:3 t "bwa-mem" w lp ls 2, \
"<./eval2roc.pl minialign.eval" u 2:3 t "minialign" w lp ls 3, \
"<./eval2roc.pl mm2.eval" u 2:3 t "minimap2" w lp ls 4, \
"<./eval2roc.pl graphmap.eval" u 2:3 t "graphmap" w lp ls 3, \
"<./eval2roc.pl minialign.eval" u 2:3 t "minialign" w lp ls 1, \
"<./eval2roc.pl mm2.eval" u 2:3 t "minimap2" w lp ls 6, \
"<./eval2roc.pl ngmlr.eval" u 2:3 t "ngm-lr" w lp ls 5
unset label
set origin 0.8,0
set size 0.79,1
set label "(b)" at graph -0.245,1.06 font "Helvetica-bold,40"
unset log
unset format
unset key
set log y
set ylab "Accumulative mapping error rate" off +0
set xlab "Mapping quality"
set yran [1e-5:0.1]
set ytics 1e-5,0.1
set format y "10^{%L}"
set xran [60:0] reverse
plot "<./eval2roc.pl blasr-mc.eval" u 1:2 w lp ls 4, \
"<./eval2roc.pl bwa.eval" u 1:2 t "bwa-mem" w lp ls 2, \
"<./eval2roc.pl graphmap.eval" u 1:2 t "graphmap" w lp ls 3, \
"<./eval2roc.pl minialign.eval" u 1:2 t "minialign" w lp ls 1, \
"<./eval2roc.pl mm2.eval" u 1:2 t "minimap2" w lp ls 6, \
"<./eval2roc.pl ngmlr.eval" u 1:2 t "ngm-lr" w lp ls 5