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r607: estimate sequence divergence

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Currently using the simplest method. There may be a more accurate estimate.
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Heng Li
2017-12-06 16:14:39 -05:00
parent 68c63f2d68
commit 704ff9f4c6
6 changed files with 29 additions and 12 deletions
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Makefile
+1 -1
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@@ -1,7 +1,7 @@
CFLAGS= -g -Wall -O2 -Wc++-compat
CPPFLAGS= -DHAVE_KALLOC
INCLUDES=
OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o index.o chain.o align.o hit.o map.o format.o pe.o ksw2_ll_sse.o
OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o index.o chain.o align.o hit.o map.o format.o pe.o esterr.o ksw2_ll_sse.o
PROG= minimap2
PROG_EXTRA= sdust minimap2-lite
LIBS= -lm -lz -lpthread