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r607: estimate sequence divergence

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Currently using the simplest method. There may be a more accurate estimate.
This commit is contained in:
Heng Li
2017-12-06 16:14:39 -05:00
parent 68c63f2d68
commit 704ff9f4c6
6 changed files with 29 additions and 12 deletions
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6
format.c
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@@ -210,6 +210,12 @@ static inline void write_tags(kstring_t *s, const mm_reg1_t *r)
}
mm_sprintf_lite(s, "\ttp:A:%c\tcm:i:%d\ts1:i:%d", type, r->cnt, r->score);
if (r->parent == r->id) mm_sprintf_lite(s, "\ts2:i:%d", r->subsc);
if (r->div >= 0.0f && r->div <= 1.0f) {
char buf[8];
if (r->div == 0.0f) buf[0] = '0', buf[1] = 0;
else sprintf(buf, "%.4f", r->div);
mm_sprintf_lite(s, "\tdv:f:%s", buf);
}
if (r->split) mm_sprintf_lite(s, "\tzd:i:%d", r->split);
}