fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-08 13:48:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r607: estimate sequence divergence

Browse Source 
Currently using the simplest method. There may be a more accurate estimate.
This commit is contained in:
Heng Li
2017-12-06 16:14:39 -05:00
parent 68c63f2d68
commit 704ff9f4c6
6 changed files with 29 additions and 12 deletions
Download Patch File Download Diff File Expand all files Collapse all files
mmpriv.h
+2
View File
@@ -79,6 +79,8 @@ void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_re
void mm_hit_sort_by_dp(void *km, int *n_regs, mm_reg1_t *r);
void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc, int match_sc, int rep_len, int is_sr);
void mm_est_err(int qlen, int n_regs, mm_reg1_t *regs, const mm128_t *a, int32_t n, uint64_t *mini_pos);
mm_seg_t *mm_seg_gen(void *km, uint32_t hash, int n_segs, const int *qlens, int n_regs0, const mm_reg1_t *regs0, int *n_regs, mm_reg1_t **regs, const mm128_t *a);
void mm_seg_free(void *km, int n_segs, mm_seg_t *segs);
void mm_pair(void *km, int max_gap_ref, int dp_bonus, int sub_diff, int match_sc, const int *qlens, int *n_regs, mm_reg1_t **regs);