fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-09-15 13:07:55 +08:00
Code Issues Packages Projects Releases Wiki Activity

r188: renamed bseq* to mm_bseq*

Browse Source 
to avoid naming collisions between minimap2 and bwa/fermi-lite/etc
This commit is contained in:
Heng Li
2017-07-19 09:26:46 -04:00
parent b9b0b6f49c
commit 71c988f6ab
10 changed files with 65 additions and 57 deletions
Download Patch File Download Diff File Expand all files Collapse all files

22
bseq.h
View File

@@ -3,19 +3,27 @@
#include <stdint.h>
struct bseq_file_s;
typedef struct bseq_file_s bseq_file_t;
#ifdef __cplusplus
extern "C" {
#endif
struct mm_bseq_file_s;
typedef struct mm_bseq_file_s mm_bseq_file_t;
typedef struct {
int l_seq, rid;
char *name, *seq, *qual;
} bseq1_t;
} mm_bseq1_t;
bseq_file_t *bseq_open(const char *fn);
void bseq_close(bseq_file_t *fp);
bseq1_t *bseq_read(bseq_file_t *fp, int chunk_size, int with_qual, int *n_);
int bseq_eof(bseq_file_t *fp);
mm_bseq_file_t *mm_bseq_open(const char *fn);
void mm_bseq_close(mm_bseq_file_t *fp);
mm_bseq1_t *mm_bseq_read(mm_bseq_file_t *fp, int chunk_size, int with_qual, int *n_);
int mm_bseq_eof(mm_bseq_file_t *fp);
extern unsigned char seq_nt4_table[256];
#ifdef __cplusplus
}
#endif
#endif