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r770: matching N bases not working properly (#155)

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Heng Li
2018-04-30 19:55:23 -04:00
parent aef7b0744c
commit 734ac379bb
9 changed files with 19 additions and 10 deletions
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minimap2.1
+4 -1
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@@ -1,4 +1,4 @@
.TH minimap2 1 "27 March 2018" "minimap2-2.10 (r761)" "Bioinformatics tools"
.TH minimap2 1 "30 April 2018" "minimap2-2.10-dirty (r770)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -322,6 +322,9 @@ no attempt to match GT-AG [n]
.BI --end-bonus \ INT
Score bonus when alignment extends to the end of the query sequence [0].
.TP
.BI --score-N \ INT
Score of a mismatch involving ambiguous bases [1].
.TP
.BR --splice-flank = yes | no
Assume the next base to a
.B GT