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r770: matching N bases not working properly (#155)

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Heng Li
2018-04-30 19:55:23 -04:00
parent aef7b0744c
commit 734ac379bb
9 changed files with 19 additions and 10 deletions
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options.c
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@@ -34,6 +34,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->min_join_flank_ratio = 0.5f;
opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1;
opt->sc_ambi = 1;
opt->zdrop = 400, opt->zdrop_inv = 200;
opt->end_bonus = -1;
opt->min_dp_max = opt->min_chain_score * opt->a;