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r770: matching N bases not working properly (#155)

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Heng Li
2018-04-30 19:55:23 -04:00
parent aef7b0744c
commit 734ac379bb
9 changed files with 19 additions and 10 deletions
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python/cmappy.pxd
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@@ -26,6 +26,7 @@ cdef extern from "minimap.h":
int min_join_flank_sc
float min_join_flank_ratio;
int a, b, q, e, q2, e2
int sc_ambi
int noncan
int zdrop, zdrop_inv
int end_bonus