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fixed bug when retaining 2ndary aln; still buggy

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Heng Li
2017-07-02 19:08:30 -04:00
parent da90b614db
commit 74d306a596
5 changed files with 31 additions and 15 deletions
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mmpriv.h
+2 -2
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@@ -41,9 +41,9 @@ void mm_split_reg(mm_reg1_t *r, mm_reg1_t *r2, int n, int qlen, mm128_t *a);
void mm_sync_regs(void *km, int n_regs, mm_reg1_t *regs);
void mm_set_parent(void *km, float mask_level, int n, mm_reg1_t *r);
void mm_update_parent(void *km, float mask_level, int n, mm_reg1_t *r);
void mm_select_sub(void *km, float mask_level, float pri_ratio, int *n_, mm_reg1_t *r);
void mm_select_sub(void *km, float mask_level, float pri_ratio, int best_n, int *n_, mm_reg1_t *r);
void mm_filter_regs(void *km, const mm_mapopt_t *opt, int *n_regs, mm_reg1_t *regs);
void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int n_regs, mm_reg1_t *regs, mm128_t *a);
void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_reg1_t *regs, mm128_t *a);
void mm_set_mapq(int n_regs, mm_reg1_t *regs);
#ifdef __cplusplus