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r1278: reduced --min-dp-len to 20 for splice:sr

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30% reduced time at 0.01% more junction errors
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Heng Li
2025-04-16 21:55:59 -04:00
parent c19e3ccb86
commit 7a540c37ca
4 changed files with 5 additions and 4 deletions
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minimap2.1
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@@ -708,7 +708,7 @@ Spliced alignment for accurate long RNA-seq reads such as PacBio iso-seq
.B splice:sr
Spliced alignment for short RNA-seq reads
.RB ( -xsplice:hq
.B --frag=yes -m25 -s40 -2K100m --heap-sort=yes --pairing=weak --sr=rna
.B --frag=yes -m25 -s40 -2K100m --heap-sort=yes --pairing=weak --sr=rna --min-dp-len=20
.BR --secondary=no ).
.TP
.B sr