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r1278: reduced --min-dp-len to 20 for splice:sr

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30% reduced time at 0.01% more junction errors
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Heng Li
2025-04-16 21:55:59 -04:00
parent c19e3ccb86
commit 7a540c37ca
4 changed files with 5 additions and 4 deletions
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options.c
+1
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@@ -183,6 +183,7 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
mo->noncan = 5, mo->b = 4, mo->q = 6, mo->q2 = 24;
mo->min_chain_score = 25;
mo->min_dp_max = 40;
mo->min_ksw_len = 20;
mo->pe_ori = 0<<1|1; // FR
mo->best_n = 10;
mo->mini_batch_size = 100000000;