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replaced --approx-ext with --sr

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--sr disables Z-drop and may come with other heurstics
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Heng Li
2017-09-20 10:51:18 -04:00
parent 4979e66ff0
commit 7a9b4db874
5 changed files with 12 additions and 10 deletions
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minimap2.1
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@@ -1,4 +1,4 @@
.TH minimap2 1 "17 September 2017" "minimap2-2.2 (r409)" "Bioinformatics tools"
.TH minimap2 1 "20 September 2017" "minimap2-2.2 (r420)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -338,7 +338,7 @@ tag ignores introns to demote hits to pseudogenes.
Short single-end reads without splicing
.RB ( -k21
.B -w11 -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000 -n2 -m20 -s40 -g100 -K50m
.BR --approx-ext ).
.BR --sr ).
.RE
.SS Miscellaneous options
.TP 10