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added idx_stat

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Heng Li
2017-04-26 22:52:28 +08:00
parent de367a340c
commit 7b7fabef4d
4 changed files with 23 additions and 7 deletions
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minimap.h
+1 -1
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@@ -8,7 +8,6 @@
#define MM_IDX_DEF_B 14
#define MM_DEREP_Q50 5.0
#define MM_F_WITH_REP 0x1
#define MM_F_NO_SELF 0x2
#define MM_F_NO_ISO 0x4
#define MM_F_AVA 0x8
@@ -87,6 +86,7 @@ mm_idx_t *mm_idx_init(int w, int k, int b, int is_hpc);
void mm_idx_destroy(mm_idx_t *mi);
mm_idx_t *mm_idx_gen(struct bseq_file_s *fp, int w, int k, int b, int is_hpc, int mini_batch_size, int n_threads, uint64_t batch_size, int keep_name);
uint32_t mm_idx_cal_max_occ(const mm_idx_t *mi, float f);
void mm_idx_stat(const mm_idx_t *idx);
const uint64_t *mm_idx_get(const mm_idx_t *mi, uint64_t minier, int *n);
mm_idx_t *mm_idx_build(const char *fn, int w, int k, int is_hpc, int n_threads);