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Release minimap2-2.17 (r941)

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Heng Li
2019-05-04 23:49:17 -04:00
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NEWS.md
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Release 2.17-r941 (4 May 2019)
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Changes since the last release:
* Fixed flawed CIGARs like `5I6D7I` (#392).
* Bugfix: TLEN should be 0 when either end is unmapped (#373 and #365).
* Bugfix: mappy is unable to write index (#372).
* Added option `--junc-bed` to load known gene annotations in the BED12
format. Minimap2 prefers annotated junctions over novel junctions (#197 and
#348). GTF can be converted to BED12 with `paftools.js gff2bed`.
* Added option `--sam-hit-only` to suppress unmapped hits in SAM (#377).
* Added preset `splice:hq` for high-quality CCS or mRNA sequences. It applies
better scoring and improves the sensitivity to small exons. This preset may
introduce false small introns, but the overall accuracy should be higher.
This version produces nearly identical alignments to v2.16, except for CIGARs
affected by the bug mentioned above.
(2.17: 5 May 2019, r941)
Release 2.16-r922 (28 February 2019)
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