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r508: use two I/O threads for mapping
-x sr applies this option by default
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+7
-1
@@ -256,6 +256,12 @@ sequences, and uses up to
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threads when mapping (the extra thread is for I/O, which is frequently idle and
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takes little CPU time).
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.TP
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.B -2
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Use two I/O threads during mapping. By default, minimap2 uses one I/O thread.
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When I/O is slow (e.g. piping to gzip, or reading from a slow pipe), the I/O
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thread may become the bottleneck. Apply this option to use one thread for input
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and another thread for output, at the cost of increased peak RAM.
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.TP
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.BI -K \ NUM
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Number of bases loaded into memory to process in a mini-batch [200M].
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Similar to option
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@@ -343,7 +349,7 @@ tag ignores introns to demote hits to pseudogenes.
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Short single-end reads without splicing
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.RB ( -k21
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.B -w11 -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000,5000 -n2 -m20 -s40 -g200
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.B -K50m --frag
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.B -2K50m --frag
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.BR --sr ).
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.RE
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.SS Miscellaneous options
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