fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-03 21:18:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

r469: first step towards PE SAM

Browse Source
This commit is contained in:
Heng Li
2017-10-05 10:38:09 -04:00
parent 16e6e589a8
commit 7cc4f6f965
5 changed files with 83 additions and 37 deletions
Download Patch File Download Diff File Expand all files Collapse all files
mmpriv.h
+1
View File
@@ -57,6 +57,7 @@ void mm_sketch(void *km, const char *str, int len, int w, int k, uint32_t rid, i
void mm_write_sam_hdr(const mm_idx_t *mi, const char *rg, const char *ver, int argc, char *argv[]);
void mm_write_paf(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const mm_reg1_t *r, void *km, int opt_flag);
void mm_write_sam(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const mm_reg1_t *r, int n_regs, const mm_reg1_t *regs);
void mm_write_sam2(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, int seg_idx, int reg_idx, int n_seg, const int *n_regs, const mm_reg1_t *const* regs, void *km);
void mm_idxopt_init(mm_idxopt_t *opt);
const uint64_t *mm_idx_get(const mm_idx_t *mi, uint64_t minier, int *n);