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diagonal global almost working

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one shot, though gaps not left-aligned at the boundary
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Heng Li
2017-06-16 12:17:23 -04:00
parent c4564c31a2
commit 7d33acbccc
3 changed files with 52 additions and 16 deletions
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ksw2.h
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@@ -27,6 +27,8 @@ extern "C" {
*/
int ksw_global(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int gapo, int gape, int w, int *n_cigar, uint32_t **cigar);
int ksw_global2(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t *mat, int8_t q, int8_t e, int w, int *n_cigar_, uint32_t **cigar_);
void ksw_gen_simple_mat(int m, int8_t *mat, int8_t a, int8_t b);
#ifdef __cplusplus