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r466: detect multi-part index more smartly

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though it might not work in an extremely rare case: the end of a sequence ends
at X*16384 and it is the last sequence in a batch. This can be resolved by
never letting the kstream_t buffer empty.
This commit is contained in:
Heng Li
2017-10-04 17:32:58 -04:00
parent 1554149158
commit 7d50e646dd
7 changed files with 40 additions and 39 deletions
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map.c
-2
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@@ -500,8 +500,6 @@ int mm_map_file_multi_seg(const mm_idx_t *idx, int n_segs, const char **fn, cons
pl.opt = opt, pl.mi = idx;
pl.n_threads = n_threads > 1? n_threads : 1;
pl.mini_batch_size = opt->mini_batch_size;
if ((opt->flag & MM_F_OUT_SAM) && !(opt->flag & MM_F_NO_SAM_SQ))
mm_write_sam_SQ(idx);
kt_pipeline(n_threads == 1? 1 : 2, worker_pipeline, &pl, 3);
free(pl.str.s);
for (i = 0; i < n_segs; ++i)