r703: added --max-clip-ratio

still testing the option
2026-10-07 13:48:12 +08:00 · 2018-02-12 13:29:18 -05:00
parent f66de7df59
commit 7ef5490884
7 changed files with 12 additions and 6 deletions
@@ -121,6 +121,7 @@ typedef struct {
 	int min_dp_max;  // drop an alignment if the score of the max scoring segment is below this threshold
 	int min_ksw_len;
 	int anchor_ext_len, anchor_ext_shift;
+	float max_clip_ratio; // drop an alignment if BOTH ends are clipped above this ratio

 	int pe_ori, pe_bonus;