r703: added --max-clip-ratio

still testing the option
This commit is contained in:
Heng Li
2018-02-12 13:29:18 -05:00
parent f66de7df59
commit 7ef5490884
7 changed files with 12 additions and 6 deletions
+1
View File
@@ -29,6 +29,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->min_dp_max = opt->min_chain_score * opt->a;
opt->min_ksw_len = 200;
opt->anchor_ext_len = 20, opt->anchor_ext_shift = 6;
opt->max_clip_ratio = 1.0f;
opt->mini_batch_size = 500000000;
opt->pe_ori = 0; // FF