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r703: added --max-clip-ratio

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still testing the option
This commit is contained in:
Heng Li
2018-02-12 13:29:18 -05:00
parent f66de7df59
commit 7ef5490884
7 changed files with 12 additions and 6 deletions
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python/cmappy.pxd
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@@ -31,6 +31,7 @@ cdef extern from "minimap.h":
int min_dp_max
int min_ksw_len
int anchor_ext_len, anchor_ext_shift
float max_clip_ratio
int pe_ori, pe_bonus
float mid_occ_frac
int32_t mid_occ