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r1183: added lr:hq; fixed transition

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* Added the lr:hq preset suggested by Nanopore developers (#1127)
 * Fixed transition scoring. It did not work with presets.
 * Cleaned up preset documentation
This commit is contained in:
Heng Li
2024-03-10 13:47:34 -04:00
parent bc588c0eeb
commit 8140259974
5 changed files with 73 additions and 29 deletions
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minimap.h
+1 -1
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@@ -5,7 +5,7 @@
#include <stdio.h>
#include <sys/types.h>
#define MM_VERSION "2.26-r1175"
#define MM_VERSION "2.26-r1183-dirty"
#define MM_F_NO_DIAG (0x001LL) // no exact diagonal hit
#define MM_F_NO_DUAL (0x002LL) // skip pairs where query name is lexicographically larger than target name