fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-02 02:28:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

r170: added a debugging flag

Browse Source 
something wrong with chaining
This commit is contained in:
Heng Li
2017-07-11 14:47:35 -04:00
parent 801bc84b01
commit 826c8ba892
3 changed files with 10 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files
main.c
+4 -2
View File
@@ -10,7 +10,7 @@
#include "minimap.h"
#include "mmpriv.h"
#define MM_VERSION "2.0-r169-pre"
#define MM_VERSION "2.0-r170-pre"
void liftrlimit()
{
@@ -48,6 +48,7 @@ static struct option long_options[] = {
{ "no-kalloc", no_argument, 0, 0 },
{ "print-qname", no_argument, 0, 0 },
{ "no-self", no_argument, 0, 0 },
{ "print-seed", no_argument, 0, 0 },
{ "version", no_argument, 0, 'V' },
{ "min-count", required_argument, 0, 'n' },
{ "min-chain-score",required_argument, 0, 'm' },
@@ -100,7 +101,8 @@ int main(int argc, char *argv[])
else if (c == 0 && long_idx == 2) keep_name = 0; // --int-rname
else if (c == 0 && long_idx == 3) mm_dbg_flag |= MM_DBG_NO_KALLOC; // --no-kalloc
else if (c == 0 && long_idx == 4) mm_dbg_flag |= MM_DBG_PRINT_QNAME; // --print-qname
else if (c == 0 && long_idx == 5) opt.flag |= MM_F_NO_SELF;
else if (c == 0 && long_idx == 5) opt.flag |= MM_F_NO_SELF; // --no-self
else if (c == 0 && long_idx == 6) mm_dbg_flag |= MM_DBG_PRINT_QNAME | MM_DBG_PRINT_SEED; // --print-seed
else if (c == 'V') {
puts(MM_VERSION);
return 0;