fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-02 06:58:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

r1206: enabled RMQ for lr:hqae

Browse Source 
Also fixed a bug in determining inner_dist for RMQ. It should have no effect on
previous presets.
This commit is contained in:
Heng Li
2024-03-20 15:29:54 -04:00
parent f51ff1abac
commit 89d4d219cd
4 changed files with 7 additions and 5 deletions
Download Patch File Download Diff File Expand all files Collapse all files
options.c
+1
View File
@@ -116,6 +116,7 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
}
} else if (strcmp(preset, "lr:hqae") == 0) { // high-quality assembly evaluation
io->flag = 0, io->k = 25, io->w = 51;
mo->flag |= MM_F_RMQ;
mo->min_mid_occ = 50, mo->max_mid_occ = 500;
mo->rmq_inner_dist = 5000;
mo->occ_dist = 200;