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replaced mapQ plot with sr roc

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figure legend and text to be updated later
This commit is contained in:
Heng Li
2017-10-19 23:43:17 -04:00
parent 4683da2455
commit 8abba332ad
6 changed files with 236 additions and 34 deletions
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tex/roc.gp
+25 -17
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@@ -14,7 +14,7 @@ set size 1.59,1.04
set multiplot layout 1,2
set label "(a)" at graph -0.245,1.06 font "Helvetica-bold,40"
set xlab "Error rate of mapped reads"
set xlab "Error rate of mapped PacBio reads"
set ylab "Fraction of mapped reads" off +1.8
set ytics 0.02
set yran [0.9:1]
@@ -34,19 +34,27 @@ unset label
set origin 0.8,0
set size 0.79,1
set label "(b)" at graph -0.245,1.06 font "Helvetica-bold,40"
unset log
unset format
unset key
set log y
set ylab "Accumulative mapping error rate" off +0
set xlab "Mapping quality"
set yran [1e-5:0.1]
set ytics 1e-5,0.1
set format y "10^{%L}"
set xran [60:0] reverse
plot "<./eval2roc.pl blasr-mc.eval" u 1:2 w lp ls 4, \
"<./eval2roc.pl bwa.eval" u 1:2 t "bwa-mem" w lp ls 2, \
"<./eval2roc.pl graphmap.eval" u 1:2 t "graphmap" w lp ls 3, \
"<./eval2roc.pl minialign.eval" u 1:2 t "minialign" w lp ls 1, \
"<./eval2roc.pl mm2.eval" u 1:2 t "minimap2" w lp ls 6, \
"<./eval2roc.pl ngmlr.eval" u 1:2 t "ngm-lr" w lp ls 5
set xlab "Error rate of mapped short reads"
set key top left
plot "<./eval2roc.pl -n2e7 bowtie2-s3.sam.eval" u 2:3 t "bowtie2" w lp ls 5, \
"<./eval2roc.pl -n2e7 bwa-s3.sam.eval" u 2:3 t "bwa-mem" w lp ls 2, \
"<./eval2roc.pl -n2e7 mm2-s3.sam.eval" u 2:3 t "minimap2" w lp ls 6, \
"<./eval2roc.pl -n2e7 snap-s3.sam.eval" u 2:3 t "snap" w lp ls 3
#unset log
#unset format
#unset key
#set log y
#set ylab "Accumulative mapping error rate" off +0
#set xlab "Mapping quality"
#set yran [1e-5:0.1]
#set ytics 1e-5,0.1
#set format y "10^{%L}"
#set xran [60:0] reverse
#plot "<./eval2roc.pl blasr-mc.eval" u 1:2 w lp ls 4, \
# "<./eval2roc.pl bwa.eval" u 1:2 t "bwa-mem" w lp ls 2, \
# "<./eval2roc.pl graphmap.eval" u 1:2 t "graphmap" w lp ls 3, \
# "<./eval2roc.pl minialign.eval" u 1:2 t "minialign" w lp ls 1, \
# "<./eval2roc.pl mm2.eval" u 1:2 t "minimap2" w lp ls 6, \
# "<./eval2roc.pl ngmlr.eval" u 1:2 t "ngm-lr" w lp ls 5