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Heng Li
2017-06-07 14:18:32 -04:00
parent c01f2dd757
commit 8ad5cfde42
2 changed files with 51 additions and 37 deletions
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minimap.h
+3 -2
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@@ -46,7 +46,8 @@ typedef struct {
typedef struct {
uint32_t cnt:31, rev:1;
uint32_t rid:31, rep:1;
uint32_t len;
uint32_t score;
int32_t parent;
int32_t qs, qe, rs, re;
} mm_reg1_t;
@@ -102,7 +103,7 @@ void mm_mapopt_init(mm_mapopt_t *opt);
void mm_mapopt_update(mm_mapopt_t *opt, const mm_idx_t *mi);
mm_tbuf_t *mm_tbuf_init(void);
void mm_tbuf_destroy(mm_tbuf_t *b);
const mm_reg1_t *mm_map(const mm_idx_t *mi, int l_seq, const char *seq, int *n_regs, mm_tbuf_t *b, const mm_mapopt_t *opt, const char *name);
mm_reg1_t *mm_map(const mm_idx_t *mi, int l_seq, const char *seq, int *n_regs, mm_tbuf_t *b, const mm_mapopt_t *opt, const char *name);
int mm_map_file(const mm_idx_t *idx, const char *fn, const mm_mapopt_t *opt, int n_threads, int tbatch_size);