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moved aln-dp.tex to ksw2/tex (a new repo)

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Heng Li
2017-06-18 11:21:34 -04:00
parent fe8327500f
commit 8e0d73740e
2 changed files with 1 additions and 171 deletions
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ksw2.c
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@@ -302,6 +302,7 @@ int ksw_global2_sse(void *km, int qlen, const uint8_t *query, int tlen, const ui
w = (w + 1 + 15) / 16 * 16 - 1;
tlen16 = (tlen + 15) / 16 * 16;
n_col = w + 1 < tlen16? w + 1 : tlen16; // number of columns in the backtrack matrix
n_col += 16, tlen16 += 16; // leave enough space at the end
mem = (uint8_t*)kcalloc(km, tlen16 * 5 + 15, 1);
u = (int8_t*)(((size_t)mem + 15) >> 4 << 4); // 16-byte aligned (though not necessary)