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fill the junction array

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modifying ksw will be the next
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Heng Li
2024-10-11 23:22:23 -04:00
parent 042c8d4d71
commit 8efe83b744
3 changed files with 40 additions and 25 deletions
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ksw2.h
+2 -1
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@@ -15,7 +15,8 @@
#define KSW_EZ_SPLICE_FOR 0x100
#define KSW_EZ_SPLICE_REV 0x200
#define KSW_EZ_SPLICE_FLANK 0x400
#define KSW_EZ_SPLICE_CMPLX 0x800
#define KSW_EZ_SPLICE_CMPLX 0x800 // use the miniprot splice model
#define KSW_EZ_SPLICE_SCORE 0x1000 // use splice score
// The subset of CIGAR operators used by ksw code.
// Use MM_CIGAR_* from minimap.h if you need the full list.