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r711: assign proper mapq to primary inversions

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Heng Li
2018-02-15 14:34:59 -05:00
parent a0d62519c1
commit 8fc5f8dc90
4 changed files with 32 additions and 5 deletions
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mmpriv.h
+1 -1
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@@ -78,7 +78,7 @@ void mm_select_sub_multi(void *km, float pri_ratio, float pri1, float pri2, int
void mm_filter_regs(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_reg1_t *regs);
void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_reg1_t *regs, mm128_t *a);
void mm_hit_sort_by_dp(void *km, int *n_regs, mm_reg1_t *r);
void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc, int match_sc, int rep_len, int is_sr);
void mm_set_mapq(void *km, int n_regs, mm_reg1_t *regs, int min_chain_sc, int match_sc, int rep_len, int is_sr);
void mm_est_err(const mm_idx_t *mi, int qlen, int n_regs, mm_reg1_t *regs, const mm128_t *a, int32_t n, const uint64_t *mini_pos);