r501: added end_bonus to extz2

This commit is contained in:
Heng Li
2017-10-11 09:39:41 -04:00
parent 65abdb8f3c
commit 9364bc64d7
6 changed files with 19 additions and 15 deletions
+1 -1
View File
@@ -51,7 +51,7 @@ void ksw_extz(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t
int8_t q, int8_t e, int w, int zdrop, int flag, ksw_extz_t *ez);
void ksw_extz2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_t m, const int8_t *mat,
int8_t q, int8_t e, int w, int zdrop, int flag, ksw_extz_t *ez);
int8_t q, int8_t e, int w, int zdrop, int end_bonus, int flag, ksw_extz_t *ez);
void ksw_extd(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_t m, const int8_t *mat,
int8_t gapo, int8_t gape, int8_t gapo2, int8_t gape2, int w, int zdrop, int flag, ksw_extz_t *ez);