fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-09-29 05:08:13 +08:00
Code Issues Packages Projects Releases Wiki Activity

r1188: added --ds to output tag ds

Browse Source 
Adapted from minigraph
This commit is contained in:
Heng Li
2024-03-10 15:01:13 -04:00
parent 23d2674c39
commit 940388f8e4
3 changed files with 75 additions and 8 deletions
Download Patch File Download Diff File Expand all files Collapse all files
main.c
+1
View File
@@ -361,6 +361,7 @@ int main(int argc, char *argv[])
fprintf(fp_help, " -R STR SAM read group line in a format like '@RG\\tID:foo\\tSM:bar' []\n");
fprintf(fp_help, " -c output CIGAR in PAF\n");
fprintf(fp_help, " --cs[=STR] output the cs tag; STR is 'short' (if absent) or 'long' [none]\n");
fprintf(fp_help, " --ds output the ds tag, which is an extension to cs\n");
fprintf(fp_help, " --MD output the MD tag\n");
fprintf(fp_help, " --eqx write =/X CIGAR operators\n");
fprintf(fp_help, " -Y use soft clipping for supplementary alignments\n");