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r179: changed the preset for assembly alignment

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Heng Li
2017-07-17 22:41:46 -04:00
parent 38aa66fa30
commit 941059292e
3 changed files with 20 additions and 6 deletions
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README.md
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@@ -27,7 +27,8 @@ Minimap2 is the successor of [minimap][minimap]. It uses a similar
minimizer-based indexing and seeding algorithm, and improves the original
minimap with homopolyer-compressed k-mers (see also [SMARTdenovo][smartdenovo]
and [longISLND][longislnd]), better chaining and the ability to produce CIGAR
with fast extension alignment (see also [libgaba][gaba] and [ksw2][ksw2]).
with fast extension alignment (see also [libgaba][gaba] and [ksw2][ksw2]) and
two-piece affine gap cost.
## Limitations