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fixed a bug/typo in Aligner.seq() (#126)

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Heng Li
2018-03-08 19:12:12 -05:00
parent 70428ca3a8
commit 96b132c97d
1 changed files with 3 additions and 3 deletions
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python/cmappy.h
+3 -3
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@@ -119,9 +119,9 @@ static char *mappy_fetch_seq(const mm_idx_t *mi, const char *name, int st, int e
*len = 0; *len = 0;
rid = mm_idx_name2id(mi, name); rid = mm_idx_name2id(mi, name);
if (rid < 0) return 0; if (rid < 0) return 0;
if (st >= mi->seq[i].len || st >= en) return 0; if (st >= mi->seq[rid].len || st >= en) return 0;
if (en < 0 || en > mi->seq[i].len) if (en < 0 || en > mi->seq[rid].len)
en = mi->seq[i].len; en = mi->seq[rid].len;
s = (char*)malloc(en - st + 1); s = (char*)malloc(en - st + 1);
*len = mm_idx_getseq(mi, rid, st, en, s); *len = mm_idx_getseq(mi, rid, st, en, s);
for (i = 0; i < *len; ++i) for (i = 0; i < *len; ++i)