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r158: optionally ignore base quality

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Heng Li
2017-07-05 18:23:50 -04:00
parent d1f518e3ca
commit 9823317e8f
4 changed files with 11 additions and 4 deletions
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@@ -1,4 +1,4 @@
.TH minimap2 1 "1 July 2017" "minimap2-2.0-r145-pre" "Bioinformatics tools"
.TH minimap2 1 "5 July 2017" "minimap2-2.0-r158-pre" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -218,6 +218,9 @@ the final CIGAR. It is the score of the max scoring segment in the alignment
and may be different from the total alignment score.
.SS Input/output options
.TP 10
.B -Q
Ignore base quality in the input file.
.TP
.B -a
Generate CIGAR and output alignments in the SAM format. Minimap2 outputs in PAF
by default.