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r618: heuristics to avoid tiny terminal exons

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Heng Li
2017-12-11 00:57:55 -05:00
parent 824712a4ee
commit 98a6e52c06
6 changed files with 69 additions and 4 deletions
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esterr.c
+5 -1
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@@ -44,7 +44,11 @@ void mm_est_err(const mm_idx_t *mi, int qlen, int n_regs, mm_reg1_t *regs, const
r->div = -1.0f;
if (r->cnt == 0) continue;
st = en = get_mini_idx(qlen, r->rev? &a[r->as + r->cnt - 1] : &a[r->as], n, mini_pos);
assert(st >= 0);
if (st < 0) {
if (mm_verbose >= 2)
fprintf(stderr, "[WARNING] logic inconsistency in mm_est_err(). Please contact the developer.\n");
continue;
}
l_ref = mi->seq[r->rid].len;
for (k = 1, j = st + 1, n_match = 1; j < n && k < r->cnt; ++j) {
int32_t x;