r618: heuristics to avoid tiny terminal exons

2026-09-27 11:28:11 +08:00 · 2017-12-11 00:57:55 -05:00
parent 824712a4ee
commit 98a6e52c06
6 changed files with 69 additions and 4 deletions
@@ -36,6 +36,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
 	opt->end_bonus = -1;
 	opt->min_dp_max = opt->min_chain_score * opt->a;
 	opt->min_ksw_len = 200;
+	opt->anchor_ext_len = 20, opt->anchor_ext_shift = 6;
 	opt->mini_batch_size = 500000000;

 	opt->pe_ori = 0; // FF