r618: heuristics to avoid tiny terminal exons

minimap2.1

@@ -272,6 +272,18 @@ However, the SIRV control does not honor this trend
 on SIRV data, please add
 .B --splice-flank=no
 to the command line.
+.TP
+.BI --end-seed-pen \ INT
+Drop a terminal anchor if
+.IR s <log( g )+ INT ,
+where
+.I s
+is the local alignment score around the anchor and
+.I g
+the length of the terminal gap in the chain. This option is only effective
+with
+.BR --splice .
+It helps to avoid tiny terminal exons. [6]
 .SS Input/output options
 .TP 10
 .B -a