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r611: added pseudocount when est divergence

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Heng Li
2017-12-08 12:57:57 -05:00
parent fec7bd713f
commit 98a999fe44
5 changed files with 13 additions and 9 deletions
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mmpriv.h
+1 -1
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@@ -79,7 +79,7 @@ void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_re
void mm_hit_sort_by_dp(void *km, int *n_regs, mm_reg1_t *r);
void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc, int match_sc, int rep_len, int is_sr);
void mm_est_err(int qlen, int n_regs, mm_reg1_t *regs, const mm128_t *a, int32_t n, uint64_t *mini_pos);
void mm_est_err(const mm_idx_t *mi, int qlen, int n_regs, mm_reg1_t *regs, const mm128_t *a, int32_t n, const uint64_t *mini_pos);
mm_seg_t *mm_seg_gen(void *km, uint32_t hash, int n_segs, const int *qlens, int n_regs0, const mm_reg1_t *regs0, int *n_regs, mm_reg1_t **regs, const mm128_t *a);
void mm_seg_free(void *km, int n_segs, mm_seg_t *segs);